BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB008E11LP1|AL425884
(839 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig938 1172 0.0
>3x_Contig938
Length = 2936
Score = 1172 bits (591), Expect = 0.0
Identities = 599/601 (99%), Gaps = 1/601 (0%)
Strand = Plus / Plus
Query: 239 tgtattccagtagctcctctctgctgaaaccgttttgatgtaatattttcaactgctgcr 298
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtattcc-gtagctcctctctgctgaaaccgttttgatgtaatattttcaactgctgca 59
Query: 299 aaacggtagatttcccactttcacctgaacccaataataatacttttaatgcatttactg 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 aaacggtagatttcccactttcacctgaacccaataataatacttttaatgcatttactg 119
Query: 359 tctcagatccaccaggagattgaccccctgaagcattcactgtgccattccgttttgcca 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 tctcagatccaccaggagattgaccccctgaagcattcactgtgccattccgttttgcca 179
Query: 419 gatcagtatcgaaaccatttactccagaatcgttcaaagccaacgcctggctgatccctg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 gatcagtatcgaaaccatttactccagaatcgttcaaagccaacgcctggctgatccctg 239
Query: 479 tcatagttccagagtgggtctctgaattattcgactgatcaaattggttagacaaagcct 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 tcatagttccagagtgggtctctgaattattcgactgatcaaattggttagacaaagcct 299
Query: 539 tgtcactattagtactattaccattaaccccatttaaaactccggtattgatattgttga 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tgtcactattagtactattaccattaaccccatttaaaactccggtattgatattgttga 359
Query: 599 aatatctcttgttttcgatattactattattactgtcgtgaatgttttcgctgtcattat 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 aatatctcttgttttcgatattactattattactgtcgtgaatgttttcgctgtcattat 419
Query: 659 tattattaccatttatattattaccaatgttgttattattattgttattattatcattat 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tattattaccatttatattattaccaatgttgttattattattgttattattatcattat 479
Query: 719 tattactattattattattaccgttatttttattgtttgcattatcgtattcagcagtat 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tattactattattattattaccgttatttttattgtttgcattatcgtattcagcagtat 539
Query: 779 tacctacgccgttacttacagtaccgtcttccgatacagtactgattttggtcttaccac 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 tacctacgccgttacttacagtaccgtcttccgatacagtactgattttggtcttaccac 599
Query: 839 t 839
|
Sbjct: 600 t 600
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9196
Number of Sequences: 1807
Number of extensions: 9196
Number of successful extensions: 432
Number of sequences better than 1.0e-20: 1
length of query: 839
length of database: 10,358,551
effective HSP length: 16
effective length of query: 823
effective length of database: 10,329,639
effective search space: 8501292897
effective search space used: 8501292897
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 50 (99.7 bits)